| 1 | Opening Movie: Setting out on a Journey in the Hoenn Region |
| 2 | Opening Movie 2 |
| 3 | Title Screen: Main Theme |
| 4 | Introductions |
| 5 | Littleroot Town |
| 6 | Birch Pokémon Lab |
| 7 | May |
| 8 | H-Help Me! |
| 9 | Battle! (Wild Pokémon) |
| 10 | Victory! (Wild Pokémon) |
| 11 | Route 101 |
| 12 | Oldale Town |
| 13 | Obtained an Item! |
| 14 | Hurry Along |
| 15 | Pokémon Center |
| 16 | Pokémon Healed |
| 17 | Trainers' eyes Meet (Youngster) |
| 18 | Pokédex Evaluation... Getting Started! |
| 19 | Trainers' eyes Meet (Lass) |
| 20 | Battle! (Trainer Battle) |
| 21 | Victory! (Trainer Battle) |
| 22 | Level Up! |
| 23 | Petalburg City |
| 24 | Pokédex Evaluation... You're on Your Way! |
| 25 | Wally's Theme |
| 26 | Route 104 |
| 27 | Petalburg Woods |
| 28 | Team Magma Appears! |
| 29 | Battle! (Team Aqua / Team Magma) |
| 30 | Victory! (Team Aqua / Team Magma) |
| 31 | Rustboro City |
| 32 | Trainers' School |
| 33 | Obtained a Key Item! |
| 34 | Crossing the Sea |
| 35 | Dewford Town |
| 36 | Trainers' eyes Meet (Tuber♀) |
| 37 | Pokédex Evaluation... Keep at It! |
| 38 | Slateport City |
| 39 | Oceanic Museum |
| 40 | Leader's Theme (Team Aqua / Team Magma) |
| 41 | Route 110 |
| 42 | Cycling |
| 43 | Trainers' eyes Meet (Triathlete) |
| 44 | Verdanturf Town |
| 45 | Received a Pokémon Egg! |
| 46 | Route 113 |
| 47 | Trainers' eyes Meet (Twins) |
| 48 | Fallarbor Town |
| 49 | Cable Car |
