| 1 | Training (Part 1) |
| 2 | Training (Part 2) |
| 3 | Training (Part 3) |
| 4 | Training (Part 4) |
| 5 | Training (Part 5) |
| 6 | Star Fox Zero Theme |
| 7 | Main Menu |
| 8 | Prologue |
| 9 | Opening Cinematic (newly arranged from Star Fox 64) |
| 10 | Corneria |
| 11 | Crisis - Fichina |
| 12 | Monumental Crisis |
| 13 | Enemy Down |
| 14 | Androsa Appears |
| 15 | Boss A |
| 16 | Mission Complete |
| 17 | Mission Accomplished |
| 18 | Stage Selection Screen |
| 19 | Sector Alpha |
| 20 | Sector Alpha - Inside the Salvadora |
| 21 | Activate Security System |
| 22 | Area 3 - Neighbouring Space |
| 23 | Pigma Appears |
| 24 | Hurry to the Colony |
| 25 | Inside the Colony |
| 26 | Deploy the Gyrowing |
| 27 | Hurry, Star Fox |
| 28 | Mobile Weapon Gigarilla |
| 29 | Zoness |
| 30 | A New Crisis |
| 31 | Katt's Theme |
| 32 | Heading to the Teleporter |
| 33 | Asteroid Field |
| 34 | Sector Beta |
| 35 | Bill's Theme |
| 36 | Katt's Theme (long version) |
| 37 | Star Wolf's Theme |
| 38 | Fortuna |
| 39 | Fortuna - Primordial Forest |
| 40 | Fortuna - Dangerous Skies |
| 41 | Boss B |
| 42 | Titania |
| 43 | Peppy Survives |
| 44 | Sector Gamma |
| 45 | Boss C |
| 46 | Sector Omega |
| 47 | Interplanetary Combat Ship, Attack Carrier |
| 48 | Return to Corneria |
| 49 | Andross's Trap (Intro) |
| 50 | Andross's Trap (Part 1) |
| 51 | Andross's Trap (Part 2) |
| 52 | Venom |
| 53 | Steadfast Heart |
| 54 | Corridor of Illusion |
| 55 | Dr Andross |
| 56 | All Clear |
| 57 | Credits Theme 1 |
| 58 | Credits Theme 2 |
| 59 | Credits Theme 3 |
| 60 | Player Down |
| 61 | Mission Failed |
| 62 | Stage Clear |
| 63 | Loading Sound - Training Menu |
| 64 | Title Cinematic (newly arranged from Star Fox 64) |
| 65 | Corneria (from Starwing-Star Fox on SNES) |
| 66 | Mission Complete (Alternate Path) |
| 67 | Arcade Mode Menu |
| 68 | Continue |
| 69 | Katt's Theme (Extended) |
| 70 | The Gravmaster Appears |
| 71 | Star Fox Guard Special Demo |
