| 1 | Metroid Prime - Title Theme |
| 2 | Menu Select |
| 3 | Prologue - In Orbit above Tallon IV |
| 4 | Prologue - Samus Appears |
| 5 | Frigate Orpheon - Outside |
| 6 | Frigate Orpheon - Biohazard |
| 7 | Item Acquisition Fanfare |
| 8 | Frigate Orpheon - Inside |
| 9 | Save Station / Map Station |
| 10 | Save Station - Samus Appears |
| 11 | Battle VS. Parasite Queen |
| 12 | Escape Frigate Orpheon |
| 13 | Battle Meta Ridley's Escape/Vs. Meta Ridley |
| 14 | Tallon Overworld - Arrival Theme |
| 15 | Elevator |
| 16 | Chozo Ruins - Intro |
| 17 | Chozo Ruins - Depths |
| 18 | Battle VS. Hive Mecha/Incinerator Drone |
| 19 | Battle VS. Hive Mecha/Incinerator Drone (No Intro) |
| 20 | Minor Item Acquisition Fanfare |
| 21 | Chozo Ruins - Main Plaza (A) |
| 22 | Chozo Ruins - Main Plaza (B) |
| 23 | Battle VS. Plated Beetle/Sheegoth/Cloaked Drone |
| 24 | Puzzle Solved |
| 25 | Chozo Ruins - Main Theme |
| 26 | Chozo Ruins - Puzzle Theme |
| 27 | Battle VS. Flaahgra |
| 28 | Magmoor Caverns - Intro |
| 29 | Magmoor Caverns - Main Theme |
| 30 | Phendrana Drifts - Intro |
| 31 | Phendrana Drifts - Main Theme |
| 32 | Phendrana Drifts - Chozo Ice Temple |
| 33 | Phendrana Drifts - Puzzle Theme |
| 34 | Glacier One - Intro |
| 35 | Battle VS. Space Pirates |
| 36 | Battle VS. Space Pirates (No Intro) |
| 37 | Glacier One - Laboratory |
| 38 | Battle Metroid Breakout/VS. Chozo Ghost |
| 39 | Battle VS. Thardus |
| 40 | Tallon Overworld - Main Theme |
| 41 | Chozo Ruins - Hall of the Elders |
| 42 | Missile Station |
| 43 | Phendrana Drifts - Depths |
| 44 | Crashed Frigate Orpheon - Ventilation Shaft |
| 45 | Crashed Frigate Orpheon - Main Theme |
| 46 | Phazon Mines - Intro |
| 47 | Phazon Mines - Main Theme |
| 48 | Omega Pirate - Intro |
| 49 | Battle VS. Omega Pirate |
| 50 | Chozo Artifact Temple - Main Theme |
| 51 | Artifact Acquisition Fanfare |
| 52 | Chozo Artifact Temple - Seal Release |
| 53 | Impact Crater - Main Theme |
| 54 | Battle VS. Metroid Prime - Exoskeleton |
| 55 | Battle VS. Metroid Prime - Core |
| 56 | Chozo Artifact Temple - Epilogue |
| 57 | Chozo Artifact Temple - Epilogue (Short) |
| 58 | Staff Credits |
| 59 | End Jingle |
| 60 | Mission Results - Record of Samus |
