| 1 | Title / Menu |
| 2 | Tutorial / Lair |
| 3 | Residental Area |
| 4 | Residental Area - Battle |
| 5 | Residental Area - Tension |
| 6 | Residental Area - Battle 2 |
| 7 | Bebop |
| 8 | Completed! |
| 9 | Mission Results |
| 10 | Subway Junction |
| 11 | Subway Junction - Battle |
| 12 | Subway Junction - Tension |
| 13 | Subway Junction - Battle 2 |
| 14 | Rocksteady |
| 15 | Dance Attack |
| 16 | Sewers |
| 17 | Sewers - Battle |
| 18 | Sewers - Tension |
| 19 | Sewers - Battle 2 |
| 20 | Slash |
| 21 | Skyscraper Area |
| 22 | Skyscraper Area - Battle |
| 23 | Skyscraper Area - Tension |
| 24 | Skyscraper Area - Battle 2 |
| 25 | Karai |
| 26 | Submerged Sewers |
| 27 | Submerged Sewers - Battle |
| 28 | Submerged Sewers - Tension |
| 29 | Submerged Sewers - Battle 2 |
| 30 | Armaggon |
| 31 | Stormy Skyscraper Area |
| 32 | Stormy Skyscraper Area - Battle |
| 33 | Stormy Skyscraper Area - Tension |
| 34 | Stormy Skyscraper Area - Battle 2 |
| 35 | Wingnut |
| 36 | TCRI Building |
| 37 | TCRI Building - Battle |
| 38 | TCRI Building - Tension |
| 39 | TCRI Building - Battle 2 |
| 40 | General Krang |
| 41 | City on Fire |
| 42 | City on Fire - Battle |
| 43 | City on Fire - Tension |
| 44 | City on Fire - Battle 2 |
| 45 | Mega Krang |
| 46 | Shredder |
| 47 | Credits |
