| 1 | World Map |
| 2 | Tutorial Mode |
| 3 | My Town |
| 4 | Ferrum League |
| 5 | Online Battle |
| 6 | Select Pokémon |
| 7 | Ferrum Stadium |
| 8 | Neos City |
| 9 | Old Ferrum Town |
| 10 | Tellur Town |
| 11 | Phos Volcano |
| 12 | Diggersby Land |
| 13 | Tellur Town (Autumn) |
| 14 | Ferrum Dojo |
| 15 | Power Training Gym |
| 16 | Old Ferrum Town (Winter) |
| 17 | Haunted House |
| 18 | Mystery Carnival |
| 19 | Neos City (Night) |
| 20 | Regi Ruins |
| 21 | Blue Dome |
| 22 | Magikarp Festival |
| 23 | Dragon’s Nest |
| 24 | Dark Colosseum |
| 25 | Dark Colosseum (Final) |
| 26 | Staff Roll |
| 27 | Battle Results |
| 28 | Battle Results: Win |
| 29 | Battle Results: Lose |
| 30 | Battle Results: Draw |
| 31 | Ferrum League: Ranking Battle Results |
| 32 | Ferrum League: Tournament Bracket |
| 33 | Ferrum League: Tournament Results |
| 34 | Congratulations |
| 35 | Synergy Burst |
| 36 | Synergy Burst (Final Battle) |
| 37 | Synergy Burst: Shadow Mewtwo |
| 38 | Synergy Burst: Shadow Mewtwo (Final Battle) |
| 39 | Event: A Friendly Chat |
| 40 | Event: Shadow Mewtwo’s Appearance |
| 41 | Event: The Truth About Shadow Mewtwo |
| 42 | Event: Reflecting on the Past |
| 43 | Event: Meeting the Elder |
| 44 | Event: Distant Lands |
| 45 | Event: Before the Final Battle |
| 46 | Event: Peace at Last |
